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Batista D, Silva DN, Vieira A, Cabral A, Pires AS, Loureiro A, Guerra-Guimarães L, Pereira AP, Azinheira H, Talhinhas P, Silva MC and Várzea V (2017) Legitimacy and Implications of Reducing Colletotrichum kahawae to Subspecies in Plant Pathology. Front. Plant Sci. 7:2051. doi: 10.3389/fpls.2016.02051 

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Guerra-Guimarães L, Tenente R, Pinheiro C, Chaves I, Silva MC, Cardoso FMH, Planchon S, Barros DR, Renaut Ricardo CP (2015) Proteomic analysis of apoplastic fluid of Coffea arabica leaves highlights novel biomarkers for resistance against Hemileia vastatrix. Front. Plant Sci. 6:478. doi: 10.3389/fpls.2015.00478 

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Loureiro A, Azinheira HG, Silva MC, Talhinhas P (2015) A method for obtaining RNA from Hemileia vastatrix appressoria produced in planta, suitable for transcriptomic analyses. Fungal Biology, 119(11): 1093–1099. 

Pires AS, Azinheira HG, Cabral A, Tavares S, Tavares D, Castro M, Várzea V, Silva MC, Abranches R, Loureiro J, Talhinhas P (2016) Cytogenomic characterization of Colletotrichum kahawae, the causal agent of coffee berry disease, reveals diversity in minichromosome profiles and genome size expansion. Plant Pathology 65, 96 8–977. Doi: 10 .1111/ppa.12 479 

Ramos AP, Talhinhas P, Sreenivasaprasad S, Oliveira H (2016) Characterization of Colletotrichum gloeosporioides, as the main causal agent of citrus anthracnose, and C. karstii as species preferentially associated with lemon twig dieback in Portugal. Phytoparasitica 44: 549. doi:10.1007/s12600-016-0537-y

Ramos AP, Tavares S, Tavares D, Silva MC, Loureiro J, Talhinhas P (2015) Flow cytometry reveals that the rust fungus, Uromyces bidentis (Pucciniales), possesses the largest fungal genome reported—2489 Mbp. Molecular Plant Pathology, 16(9): 1006–1010. DOI: 10.1111/mpp.12255 

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Talhinhas P, Azinheira HG, Vieira B, Loureiro A, Tavares S, Batista D, Morin E, Petitot A-S, Paulo OS, Poulain J, Da Silva C, Duplessis S, Silva MC, Fernandez D (2014) Overview of the functional virulent genome of the coffee leaf rust pathogen Hemileia vastatrix with an emphasis on early stages of infection. Front. Plant Sci. 5:88. doi: 10.3389/fpls.2014.00088 

Talhinhas P, Batista D, Diniz I, Vieira A, Silva DN, Loureiro A, Tavares S, Pereira AP, Azinheira HG, Guerra-Guimarães L, Várzea V, Silva MC (2017) The Coffee Leaf Rust pathogen Hemileia vastatrix: One and a half centuries around the tropics. Molecular Plant Pathology DOI: 10.1111/mpp.12512

Talhinhas P, Silva E, Nunes N, Ramos AP (2016) First Report of Puccinia thaliae Causing Rust on Canna spp. in Europe. Plant Disease 100(6): 1242-1242. doi:10.1094/PDIS-12-15-1404-PDN

Tavares S, Ramos AP, Pires AS, Azinheira HG, Caldeirinha P, Link T, Abranches R, Silva MC, Voegele RT, Loureiro J, Talhinhas P (2014) Genome size analyses of Pucciniales reveal the largest fungal genomes. Front. Plant Sci. 5:422. doi:10.3389/fpls.2014.00422

Vieira A, Cabral A, Fino J, Azinheira HG, Loureiro A, Talhinhas P, Pires AS, Varzea V, Moncada P, Oliveira H, Silva MC, Paulo OS, Batista D (2016) Comparative validation of conventional and rna-seq data-derived reference genes for qpcr expression studies of Colletotrichum kahawae. PLoS ONE 11(3): e0150651. doi:10.1371/journal.pone.0150651 

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Mullett MS, Adamson K, Bragança H, Bulgakov TS, Georgieva M, Henriques J, Jürisoo L, Laas M, Drenkhan R. 2018. New country and regional records of the pine needle blight pathogens Lecanosticta acicolaDothistroma septosporum and Dothistroma pini. Forest Pathology.

Talhinhas P, Loureiro A, Oliveira H. 2018. Olive anthracnose: a yield- and oil quality-degrading disease caused by several species of Colletotrichum that differ in virulence, host preference and geographical distribution. Molecular Plant Pathology 19(8), 1797–1807. DOI: 10.1111/mpp.12676

Silva DN, Varzea V, Paulo OS, Batista D. 2018. Population genomic footprints of host adaptation, introgression and recombination in coffee leaf rust. MOLECULAR PLANT PATHOLOGY 19(7), 1742–1753. DOI: 10.1111/mpp.12657

Silva JAG, Resende MLV, Monteiro ACA, Pádua MA, Guerra-Guimarães L, Medeiros FL, Martins SA, Botelho DMS. 2019. Resistance inducers applied alone or in association with fungicide for the management of leaf rust and brown eye spot of coffee under field conditions. Journal of Phytopathology. 2019;00:1–10.

Aigoun-Mouhous W, Elena G, Cabral A, León M, Sabaou N, Armengol J, Chaouia C, Mahamedi AE, Berraf-Tebbal A. 2019. Characterization and pathogenicity of Cylindrocarpon-like asexual morphs associated with black foot disease in Algerian grapevine nurseries, with the description of Pleiocarpon algeriense sp. nov. Eur J Plant Pathol (2019).

Vieira A, Diniz I, Loureiro A, Pereira AP, Silva MC, Várzea V, Batista D. 2018. Aggressiveness profiling of the coffee pathogen Colletotrichum kahawae. Plant Pathology 68,358–368. Doi: 10.1111/ppa.12950

 Silva A.C., Henriques J., Diogo E., Ramos A.P., Bragança H. 2019. First report of Sydowia polyspora causing disease on Pinus pinea shoots. Forest Pathology, e12570.