Micologia

Barradas C, Phillips AJL, Correia A, Diogo E, Bragança H, Alves A (2016) Diversity and potential impact of Botryosphaeriaceae species associated with Eucalyptus globulus plantations in Portugal. Eur J Plant Pathol 146: 245. doi:10.1007/s10658-016-0910-1 1

Batista D, Silva DN, Vieira A, Cabral A, Pires AS, Loureiro A, Guerra-Guimarães L, Pereira AP, Azinheira H, Talhinhas P, Silva MC and Várzea V (2017) Legitimacy and Implications of Reducing Colletotrichum kahawae to Subspecies in Plant Pathology. Front. Plant Sci. 7:2051. doi: 10.3389/fpls.2016.02051 

Bragança H, Neno J, Henriques J, Diogo E, Alves A (2016) First Report of Diplodia quercivora Causing Dieback on Quercus suber and in Europe. Plant Disease 100(10): 2166-2166. doi:10.1094/PDIS-03-16-0380-PDN

Drenkhan R, Tomešová-Haataja V, Fraser S, Bradshaw RE, Vahalík P, Mullett MS, Martín-García J, Bulman LS, Wingfield MJ, Kirisits T, Cech TL, Schmitz S, Baden R, Tubby K, Brown A, Georgieva M, Woods A, Ahumada R, Jankovský L, Thomsen IM, Adamson K, Marçais B, Vuorinen M, Tsopelas P, Koltay A, Halasz A, La Porta N, Anselmi N, Kiesnere R, Markovskaja S, Kačergius A, Papazova-Anakieva I, Risteski M, Sotirovski K, Lazarević J, Solheim H, Boroń P, Bragança H, Chira D, Musolin DL, Selikhovkin AV, Bulgakov TS, Keča N, Karadžić D, Galovic V, Pap P, Markovic M, Poljakovic Pajnik L, Vasic V, Ondrušková E, Piškur B, Sadiković D, Diez JJ, Solla A, Millberg H, Stenlid J, Angst A, Queloz V, Lehtijärvi A, Doğmuş-Lehtijärvi HT, Oskay F, Davydenko K, Meshkova V, Craig D, Woodward S, Barnes I (2016) Global geographic distribution and host range of Dothistroma species: a comprehensive review. For. Path., 46: 408–442. doi:10.1111/efp.12290

González-Domínguez E, Alves A, León M, Armengol J (2017) Characterization of Botryosphaeriaceae species associated with diseased loquat (Eriobotrya japonica) in Spain. Plant Pathology 66, 77–89. Doi: 10.1111 /ppa.12556 

Guerra-Guimarães L, Tenente R, Pinheiro C, Chaves I, Silva MC, Cardoso FMH, Planchon S, Barros DR, Renaut Ricardo CP (2015) Proteomic analysis of apoplastic fluid of Coffea arabica leaves highlights novel biomarkers for resistance against Hemileia vastatrix. Front. Plant Sci. 6:478. doi: 10.3389/fpls.2015.00478 

Henriques J, Nóbrega F, Sousa E, Lima L. 2016. Analysis of the genetic diversity and phylogenetic relationships of Biscogniauxia mediterranea isolates associated with cork oak. Phytoparasitica, 44(1): 19–34 DOI: 10.1007/s12600-015-0503-0. 

Linaldeddu BT, Deidda A, Scanu B, Franceschini A, Alves A, Abdollahzadeh J, Phillips AJL (2016) Phylogeny, morphology and pathogenicity of Botryosphaeriaceae, Diatrypaceae and Gnomoniaceae associated with branch diseases of hazelnut in Sardinia (Italy). Eur J Plant Pathol 146: 259. doi:10.1007/s10658-016-0912-z 

Loureiro A, Azinheira HG, Silva MC, Talhinhas P (2015) A method for obtaining RNA from Hemileia vastatrix appressoria produced in planta, suitable for transcriptomic analyses. Fungal Biology, 119(11): 1093–1099. http://dx.doi.org/10.1016/j.funbio.2015.08.008 

Pires AS, Azinheira HG, Cabral A, Tavares S, Tavares D, Castro M, Várzea V, Silva MC, Abranches R, Loureiro J, Talhinhas P (2016) Cytogenomic characterization of Colletotrichum kahawae, the causal agent of coffee berry disease, reveals diversity in minichromosome profiles and genome size expansion. Plant Pathology 65, 96 8–977. Doi: 10 .1111/ppa.12 479 

Ramos AP, Talhinhas P, Sreenivasaprasad S, Oliveira H (2016) Characterization of Colletotrichum gloeosporioides, as the main causal agent of citrus anthracnose, and C. karstii as species preferentially associated with lemon twig dieback in Portugal. Phytoparasitica 44: 549. doi:10.1007/s12600-016-0537-y

Ramos AP, Tavares S, Tavares D, Silva MC, Loureiro J, Talhinhas P (2015) Flow cytometry reveals that the rust fungus, Uromyces bidentis (Pucciniales), possesses the largest fungal genome reported—2489 Mbp. Molecular Plant Pathology, 16(9): 1006–1010. DOI: 10.1111/mpp.12255 

Silva DN, Duplessis S, Talhinhas P, Azinheira H, Paulo OS, Batista D (2015) Genomic patterns of positive selection at the origin of rust fungi. PLoS ONE 10(12): e0143959. doi:10.1371/journal.pone.0143959

Talhinhas P, Azinheira HG, Vieira B, Loureiro A, Tavares S, Batista D, Morin E, Petitot A-S, Paulo OS, Poulain J, Da Silva C, Duplessis S, Silva MC, Fernandez D (2014) Overview of the functional virulent genome of the coffee leaf rust pathogen Hemileia vastatrix with an emphasis on early stages of infection. Front. Plant Sci. 5:88. doi: 10.3389/fpls.2014.00088 

Talhinhas P, Batista D, Diniz I, Vieira A, Silva DN, Loureiro A, Tavares S, Pereira AP, Azinheira HG, Guerra-Guimarães L, Várzea V, Silva MC (2017) The Coffee Leaf Rust pathogen Hemileia vastatrix: One and a half centuries around the tropics. Molecular Plant Pathology DOI: 10.1111/mpp.12512

Talhinhas P, Silva E, Nunes N, Ramos AP (2016) First Report of Puccinia thaliae Causing Rust on Canna spp. in Europe. Plant Disease 100(6): 1242-1242. doi:10.1094/PDIS-12-15-1404-PDN

Tavares S, Ramos AP, Pires AS, Azinheira HG, Caldeirinha P, Link T, Abranches R, Silva MC, Voegele RT, Loureiro J, Talhinhas P (2014) Genome size analyses of Pucciniales reveal the largest fungal genomes. Front. Plant Sci. 5:422. doi:10.3389/fpls.2014.00422

Vieira A, Cabral A, Fino J, Azinheira HG, Loureiro A, Talhinhas P, Pires AS, Varzea V, Moncada P, Oliveira H, Silva MC, Paulo OS, Batista D (2016) Comparative validation of conventional and rna-seq data-derived reference genes for qpcr expression studies of Colletotrichum kahawae. PLoS ONE 11(3): e0150651. doi:10.1371/journal.pone.0150651 

Camacho I, Leça R, Sardinha D, Camacho R, Sadyś M. (2018) Occurrence of Puccinia spp. spores in Madeira Island and their phytopathological importance. European Journal of Plant Pathology 150(4):955–969.

Mullett MS, Adamson K, Bragança H, Bulgakov TS, Georgieva M, Henriques J, Jürisoo L, Laas M, Drenkhan R. 2018. New country and regional records of the pine needle blight pathogens Lecanosticta acicolaDothistroma septosporum and Dothistroma pini. Forest Pathology. https://doi.org/10.1111/efp.12440

Talhinhas P, Loureiro A, Oliveira H. 2018. Olive anthracnose: a yield- and oil quality-degrading disease caused by several species of Colletotrichum that differ in virulence, host preference and geographical distribution. Molecular Plant Pathology 19(8), 1797–1807. DOI: 10.1111/mpp.12676

Silva DN, Varzea V, Paulo OS, Batista D. 2018. Population genomic footprints of host adaptation, introgression and recombination in coffee leaf rust. MOLECULAR PLANT PATHOLOGY 19(7), 1742–1753. DOI: 10.1111/mpp.12657

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